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1

Translation in the RNA World: Insight from the Proto-Ribosome Model

Chen, Ke, Fei, Jingyi, Zhang, Jichuan, Cole, John, Ha, Taekjip, Luthey-Schulten, Zaida

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

2

Probing cellular protein complexes using single-molecule pull-down

Chen, Jie, Xiang, Yang K., Ha, Taekjip, Jain, Ankur, Liu, Ruijie, Ramani, Biswarathan, Arauz, Edwin, Ishitsuka, Yuji, Ragunathan, Kaushik, Park, Jeehae

Journal:

Year:

2011

Language:

english

File:

PDF, 1017 KB

english, 2011

3

Ultrahigh-resolution optical trap with single-fluorophore sensitivity

Comstock, Matthew J, Ha, Taekjip, Chemla, Yann R

Journal:

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

4

Multimodal optical sensing and analyte specificity using single-walled carbon nanotubes

Heller, Daniel A., Jin, Hong, Martinez, Brittany M., Patel, Dhaval, Miller, Brigid M., Yeung, Tsun-Kwan, Jena, Prakrit V., Höbartner, Claudia, Ha, Taekjip, Silverman, Scott K.

Journal:

Nature Nanotechnology

Year:

2008

Language:

english

File:

PDF, 582 KB

english, 2008

5

Single-Molecule Views of Protein Movement on Single-Stranded DNA

Ha, Taekjip, Kozlov, Alexander G., Lohman, Timothy M.

Journal:

Annual Review of Biophysics

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

6

Single-molecule pull-down for studying protein interactions

Jain, Ankur, Liu, Ruijie, Xiang, Yang K, Ha, Taekjip

Journal:

Nature Protocols

Year:

2012

Language:

english

File:

PDF, 852 KB

english, 2012

7

Analysis of Single-Molecule FRET Trajectories Using Hidden Markov Modeling

McKinney, Sean A., Joo, Chirlmin, Ha, Taekjip

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 1.55 MB

english, 2006

8

Advances in Single-Molecule Fluorescence Methods for Molecular Biology

Joo, Chirlmin, Balci, Hamza, Ishitsuka, Yuji, Buranachai, Chittanon, Ha, Taekjip

Journal:

Annual Review of Biochemistry

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

9

A rule of seven in Watson-Crick base-pairing of mismatched sequences

Cisse, Ibrahim I, Kim, Hajin, Ha, Taekjip

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 691 KB

english, 2012

10

Single-Molecule Approaches Embrace Molecular Cohorts

Journal:

Year:

2013

Language:

english

File:

PDF, 433 KB

english, 2013

11

Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility

Ngo, Thuy T.M., Zhang, Qiucen, Zhou, Ruobo, Yodh, Jaya G., Ha, Taekjip

Journal:

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

12

Measuring the Physical Properties of DNA on a Genomic Scale

Basu, Aakash, Kayikcioglu, Tunc, Ngo, Thuy, Zhang, Quicen, Cieza Huaman, Basilio, Hejna, Miroslav, Rube, Tomas, Song, Jun, Ha, Taekjip

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 45 KB

english, 2019

13

Nanomechanics and co-transcriptional folding of Spinach and Mango

Mitra, Jaba, Ha, Taekjip

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.61 MB

english, 2019

14

Very fast CRISPR on demand

Liu, Yang, Zou, Roger S., He, Shuaixin, Nihongaki, Yuta, Li, Xiaoguang, Razavi, Shiva, Wu, Bin, Ha, Taekjip

Journal:

Year:

2020

File:

PDF, 1.19 MB

2020

15

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch

Huang, Lin, Liao, Ting-Wei, Wang, Jia, Ha, Taekjip, Lilley, David M J

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.20 MB

2020

16

Single-Molecule FRET

Journal:

Single Molecules

Year:

2001

Language:

english

File:

PDF, 49 KB

english, 2001

17

Single-Molecule Four-Color FRET

Jinwoo Lee , Sanghwa Lee , Kaushik Ragunathan, Dr. Chirlmin Joo, Prof. Dr. Taekjip Ha, Prof. Dr. Sungchul Hohng

Journal:

Angewandte Chemie

Year:

2010

Language:

english

File:

PDF, 642 KB

english, 2010

18

Single-Molecule Four-Color FRET

Jinwoo Lee , Sanghwa Lee , Kaushik Ragunathan, Dr. Chirlmin Joo, Prof. Dr. Taekjip Ha, Prof. Dr. Sungchul Hohng

Journal:

Angewandte Chemie International Edition

Year:

2010

Language:

english

File:

PDF, 661 KB

english, 2010

19

Forcing a connection: Impacts of single-molecule force spectroscopy on in vivo tension sensing

Michael D. Brenner, Ruobo Zhou, Taekjip Ha

Journal:

Year:

2011

Language:

english

File:

PDF, 404 KB

english, 2011

20

Single-Molecule Quantum-Dot Fluorescence Resonance Energy Transfer

Sungchul Hohng, Taekjip Ha

Journal:

Year:

2005

Language:

english

File:

PDF, 163 KB

english, 2005

21

Cover Picture: Single-Molecule Quantum-Dot Fluorescence Resonance Energy Transfer (ChemPhysChem 5/2005)

Sungchul Hohng, Taekjip Ha

Journal:

Year:

2005

File:

PDF, 34 KB

2005

22

Stereospecific Effects Determine the Structure of a Four-Way DNA Junction

Jia Liu, Anne-Cécile Déclais, Sean A. McKinney, Taekjip Ha, David G. Norman, David M.J. Lilley

Journal:

Chemistry & Biology

Year:

2005

Language:

english

File:

PDF, 522 KB

english, 2005

23

Ratiometric measurement and identification of single diffusing molecules

Maxime Dahan, Ashok A. Deniz, Taekjip Ha, Daniel S. Chemla, Peter G. Schultz, Shimon Weiss

Journal:

Chemical Physics

Year:

1999

Language:

english

File:

PDF, 881 KB

english, 1999

24

Temporal fluctuations of fluorescence resonance energy transfer between two dyes conjugated to a single protein

Taekjip Ha, Alice Y. Ting, Joy Liang, Daniel S. Chemla, Peter G. Schultz, Shimon Weiss, Ashok A. Deniz

Journal:

Chemical Physics

Year:

1999

Language:

english

File:

PDF, 308 KB

english, 1999

25

Photonics: How nanocrystals lost their blink

Journal:

Year:

2009

Language:

english

File:

PDF, 1.12 MB

english, 2009

26

Branch migration enzyme as a Brownian ratchet

Rasnik, Ivan, Jeong, Yong-Joo, McKinney, Sean A, Rajagopal, Vaishnavi, Patel, Smita S, Ha, Taekjip

Journal:

The EMBO Journal

Year:

2008

Language:

english

File:

PDF, 300 KB

english, 2008

27

BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation

Yodh, Jaya G, Stevens, Benjamin C, Kanagaraj, Radhakrishnan, Janscak, Pavel, Ha, Taekjip

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

28

5′-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase

Tomko, Eric J, Jia, Haifeng, Park, Jeehae, Maluf, Nasib K, Ha, Taekjip, Lohman, Timothy M

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 2.44 MB

english, 2010

29

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

Ha, Taekjip, Rasnik, Ivan, Cheng, Wei, Babcock, Hazen P., Gauss, George H., Lohman, Timothy M., Chu, Steven

Journal:

Year:

2002

Language:

english

File:

PDF, 228 KB

english, 2002

30

Repetitive shuttling of a motor protein on DNA

Myong, Sua, Rasnik, Ivan, Joo, Chirlmin, Lohman, Timothy M., Ha, Taekjip

Journal:

Year:

2005

Language:

english

File:

PDF, 496 KB

english, 2005

31

SSB protein diffusion on single-stranded DNA stimulates RecA filament formation

Roy, Rahul, Kozlov, Alexander G., Lohman, Timothy M., Ha, Taekjip

Journal:

Year:

2009

Language:

english

File:

PDF, 1.69 MB

english, 2009

32

SSB protein diffusion on single-stranded DNA stimulates RecA filament formation

Roy, Rahul, Kozlov, Alexander G., Lohman, Timothy M., Ha, Taekjip

Journal:

Year:

2009

File:

PDF, 390 KB

2009

33

Coordinating DNA replication by means of priming loop and differential synthesis rate

Pandey, Manjula, Syed, Salman, Donmez, Ilker, Patel, Gayatri, Ha, Taekjip, Patel, Smita S.

Journal:

Year:

2009

Language:

english

File:

PDF, 975 KB

english, 2009

34

Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics

Grashoff, Carsten, Hoffman, Brenton D., Brenner, Michael D., Zhou, Ruobo, Parsons, Maddy, Yang, Michael T., McLean, Mark A., Sligar, Stephen G., Chen, Christopher S., Ha, Taekjip

Journal:

Year:

2010

Language:

english

File:

PDF, 671 KB

english, 2010

35

Dissecting metal ion–dependent folding and catalysis of a single DNAzyme

Kim, Hee-Kyung, Rasnik, Ivan, Liu, Juewen, Ha, Taekjip, Lu, Yi

Journal:

Nature Chemical Biology

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

36

A practical guide to single-molecule FRET

Roy, Rahul, Hohng, Sungchul, Ha, Taekjip

Journal:

Year:

2008

Language:

english

File:

PDF, 702 KB

english, 2008

37

Nonblinking and long-lasting single-molecule fluorescence imaging

Rasnik, Ivan, McKinney, Sean A, Ha, Taekjip

Journal:

Year:

2006

Language:

english

File:

PDF, 195 KB

english, 2006

38

DNA nanotechnology: A nanomachine goes live

Ishitsuka, Yuji, Ha, Taekjip

Journal:

Nature Nanotechnology

Year:

2009

Language:

english

File:

PDF, 189 KB

english, 2009

39

Structural dynamics of individual Holliday junctions

McKinney, Sean A., Déclais, Anne-Cécile, Lilley, David M.J., Ha, Taekjip

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 230 KB

english, 2002

40

Complexin and Ca2+ stimulate SNARE-mediated membrane fusion

Yoon, Tae-Young, Lu, Xiaobing, Diao, Jiajie, Lee, Soo-Min, Ha, Taekjip, Shin, Yeon-Kyun

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 697 KB

english, 2008

41

Erratum: Observation of internal cleavage and ligation reactions of a ribozyme

Nahas, Michelle, Wilson, Timothy J, Hohng, Sungchul, Jarvie, Kaera, Lilley, David M J, Ha, Taekjip

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 56 KB

english, 2004

42

Observation of internal cleavage and ligation reactions of a ribozyme

Nahas, Michelle K, Wilson, Timothy J, Hohng, Sungchul, Jarvie, Kaera, Lilley, David M J, Ha, Taekjip

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 959 KB

english, 2004

43

Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging

Shi, Xinghua, Jung, Yonil, Lin, Li-Jung, Liu, Cheng, Wu, Cong, Cann, Isaac K O, Ha, Taekjip

Journal:

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

44

Polarization Spectroscopy of Single Fluorescent Molecules

Ha, Taekjip, Laurence, Ted A., Chemla, Daniel S., Weiss, Shimon

Journal:

Journal of Physical Chemistry B

Year:

1999

Language:

english

File:

PDF, 261 KB

english, 1999

45

Single-Molecule Studies of HIV-1 Protease Catalysis Enabled by Chemical Protein Synthesis

Vladimir Yu. Torbeev, Su-A Myong, Taekjip Ha, Stephen B. H. Kent

Journal:

Israel Journal of Chemistry

Year:

2011

Language:

english

File:

PDF, 1.83 MB

english, 2011

46

Cover Picture: Single-Molecule Studies of HIV-1 Protease Catalysis Enabled by Chemical Protein Synthesis (Isr. J. Chem. 8-9/2011)

Vladimir Yu. Torbeev, Su-A Myong, Taekjip Ha, Stephen B. H. Kent

Journal:

Israel Journal of Chemistry

Year:

2011

File:

PDF, 573 KB

2011

47

Single-Molecule Imaging: A Collagenase Pauses before Embarking on a Killing Spree

Gwangrog Lee, Taekjip Ha

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 163 KB

english, 2012

48

Stepwise translocation of nucleic acid motors

Sua Myong, Taekjip Ha

Journal:

Current Opinion in Structural Biology

Year:

2010

Language:

english

File:

PDF, 493 KB

english, 2010

49

Bridging Conformational Dynamics and Function Using Single-Molecule Spectroscopy

Sua Myong, Benjamin C. Stevens, Taekjip Ha

Journal:

Year:

2006

Language:

english

File:

PDF, 856 KB

english, 2006

50

The SNARE Complex from Yeast Is Partially Unstructured on the Membrane

Zengliu Su, Yuji Ishitsuka, Taekjip Ha, Yeon-Kyun Shin

Journal:

Year:

2008

Language:

english

File:

PDF, 1010 KB

english, 2008

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